×
Home
Current Archive Editorial Board News Contact
Research paper

OVERVIEW OF SURROGATE MODELING FOR HUXLEY-TYPE MUSCLE SIMULATIONS IN CARDIAC BIOMECHANICS

By
Bogdan Milićević ,
Bogdan Milićević
Miloš Ivanović ,
Miloš Ivanović
Boban Stojanović ,
Boban Stojanović
Miljan Milošević ,
Miljan Milošević
Miloš Kojić ,
Miloš Kojić
Nenad Filipović
Nenad Filipović

Abstract

Huxley-type muscle models offer a physiologically grounded description of cardiac contraction but remain computationally prohibitive for large-scale, multi-scale simulations. This article reviews surrogate modeling strategies that alleviate these costs for ventricular biomechanics, with emphasis on data-driven (RNN/TCN/GRU) and physics-informed (PINN) formulations and their coupling to finite-element solvers. The data-driven approach utilizes deep neural networks trained on numerical simulation data to replicate the behavior of the Huxley model while significantly reducing processing costs. The physics-informed approach approximates solutions to Huxley’s muscle contraction equation, which governs cross-bridge dynamics and force generation. By predicting the probability of myosin-actin interactions, this method enables direct calculation of stress and stiffness for finite element simulations. The coupling of these surrogate models with finite element computational frameworks allows for faster and more scalable simulations. Our goal is to provide a consolidated reference and actionable guidance for selecting and implementing surrogate approaches for Huxley-type muscle simulations.

References

1.
Bai S, Kolter JZ, Koltun V. An Empirical Evaluation of Generic Convolutional and Recurrent Networks for Sequence Modeling. 2018;
2.
Bathe KJ. *Finite element procedures*. 1996.
3.
Dey R, Salem FM. Gate-variants of Gated Recurrent Unit (GRU) neural networks. In: *2017 IEEE 60th International Midwest Symposium on Circuits and Systems (MWSCAS)*, IEEE. 2017.
4.
Ghavamian F, Simone A. Accelerating multiscale finite element simulations of history-dependent materials using a recurrent neural network. *Computer Methods in Applied Mechanics and Engineering. 2019;357:112594.
5.
Gordon M, Huxley AF, Julian FJ. The variation in isometric tension with sarcomere length in vertebrate muscle fibres. *Journal of Physiology. 1966;184*(1:170–92.
6.
Hochreiter S, Schmidhuber J. Long Short-Term Memory. *Neural Computation. 1997;9*(8:1735–80.
7.
Hunter PJ, McCulloch AD, Keurs HEDJ. Modelling the mechanical properties of cardiac muscle. *Progress in Biophysics and Molecular Biology. 1998;69*(2–3:289–331.
8.
Huxley F. Muscle structure and theories of contraction. *Progress in Biophysics and Biophysical Chemistry. 1957;7:255–318.
9.
Ivanović M, Kaplarević-Mališić A, Stojanović B, Svičević M, Mijailovich SM. Machine learned domain decomposition scheme applied to parallel multi-scale muscle simulation. *The International Journal of High Performance Computing Applications. 2019;33*(5:885–96.
10.
Ivanović M, Stojanović B, Kaplarević-Mališić A, Gilbert R, Mijailovich S. Distributed multi-scale muscle simulation in a hybrid MPI–CUDA computational environment. *SIMULATION. 2015;92*(1:19–31.
11.
Jain LC, Medsker LR. *Recurrent Neural Networks: Design and Applications*. 1999.
12.
Kojic M, Bathe KJ. *Inelastic analysis of solids and structures*. 2005.
13.
Markidis S. The Old and the New: Can Physics-Informed Deep-Learning Replace Traditional Linear Solvers. *Frontiers in Big Data. 2021;4.
14.
Mijailovich SM, Fredberg JJ, Butler JP. On the theory of muscle contraction: filament extensibility and the development of isometric force and stiffness. *Biophysical Journal. 1996;71*(3:1475–84.
15.
Mijailovich SM, Stojanovic B, Kojic M, Liang A, Wedeen VJ, Gilbert RJ. Derivation of a finite-element model of lingual deformation during swallowing from the mechanics of mesoscale myofiber tracts obtained by MRI. *Journal of Applied Physiology. 2010;109*(5:1500–14.
16.
Milićević B, Ivanović M, Stojanović B, Milošević M, Kojić M, Filipović N. Huxley muscle model surrogates for high-speed multi-scale simulations of cardiac contraction. *Computers in Biology and Medicine. 2022;149:105963.
17.
Moniz JRA, Krueger D. 2018;
18.
Pascanu R, Mikolov T, Bengio Y. On the difficulty of training Recurrent Neural Networks. 2012;
19.
Raissi M, Perdikaris P, Karniadakis GE. Physics Informed Deep Learning. 2017.
20.
Raissi M, Perdikaris P, Karniadakis GE. Physics Informed Deep Learning. 2017.
21.
Raissi M, Perdikaris P, Karniadakis GE. Physics-informed neural networks: A deep learning framework for solving forward and inverse problems involving nonlinear partial differential equations. *Journal of Computational Physics. 2019;378:686–707.
22.
Stojanovic B, Svicevic M, Kaplarevic-Malisic A, Gilbert RJ, Mijailovich SM. Multiscale striated muscle contraction model linking sarcomere length-dependent cross-bridge kinetics to macroscopic deformation. *Journal of Computational Science. 2020;39:101062.
23.
Stojanovic BS, Svicevic MR, Kaplarevic-Malisic AM. Coupling finite element and Huxley models in multiscale muscle modeling. In: *2015 IEEE 15th International Conference on Bioinformatics and Bioengineering (BIBE)*, IEEE. 2015.
24.
Stojanovic B, Kojic M, Rosic M, Tsui CP, Tang CY. An extension of Hill’s three-component model to include different fibre types in finite element modelling of muscle. *International Journal for Numerical Methods in Engineering. 2007;71*(7:801–17.
25.
Oord A, Dieleman S, Zen H. WaveNet: A Generative Model for Raw Audio. 2016;
26.
Yan S, Zou X, Ilkhani M, Jones A. An efficient multiscale surrogate modelling framework for composite materials considering progressive damage based on artificial neural networks. *Composites Part B: Engineering. 2020;194:108014.
27.
Yu Y, Si X, Hu C, Zhang J. A Review of Recurrent Neural. 2019.

Citation

Article metrics

Google scholar: See link

The statements, opinions and data contained in the journal are solely those of the individual authors and contributors and not of the publisher and the editor(s). We stay neutral with regard to jurisdictional claims in published maps and institutional affiliations.